Home > X International Conference on Grapevine Breeding and Genetics > PLASTID DNA SEQUENCE DIVERSITY IN A WORLDWIDE SET OF GRAPEVINE CULTIVARS (VITIS VINIFERA L. SUBSP. VINIFERA)

Articles

PLASTID DNA SEQUENCE DIVERSITY IN A WORLDWIDE SET OF GRAPEVINE CULTIVARS (VITIS VINIFERA L. SUBSP. VINIFERA)

Article number

1046_84

Pages

609 – 616

Language

English

Abstract

DNA sequence diversity was investigated at two plastid regions (the trnH-psbA intergenic spacer and the rpl16 intron) in a geographically diverse group of 113 cultivated grape samples.
This group included 40 samples from the Republic of Georgia, home to over 500 grape cultivars and the earliest archaeological evidence of grape domestication.
The greater Caucasus region in which Georgia lies is widely believed to be the area in which grape domestication began, and the study of genetic diversity in this region is viewed as key to understanding grape domestication in general. Four plastid haplotypes are evident in the 113 samples, and are designated by their character-states at each of the 3 polymorphic positions: (AAA) 23 samples, (ATT) 29 samples, (GTA) 26 samples, and (ATA) 35 samples.
The AAA haplotype was only observed in Georgian samples.
The observation that the Georgian cultivars exhibited both unique plastid DNA variation (the AAA haplotype) and all other observed plastid haplotypes is consistent with previous studies that have observed both unique and high levels of genetic variation in wild grapes (V. vinifera subsp. sylvestris) in the greater Caucasus region.

Publication

X International Conference on Grapevine Breeding and Genetics

Authors

T. Beridze, I. Pipia, J. Beck, S.-C. Hsu, B. Schaal, M. Gamkrelidze, M. Gogniashvili, V. Tabidze, P. This, R. Bacilieri, V. Gotsiridze, M. Glonti

Keywords

grape DNA, trnH-psbA intergenic spacer, rpl16 intron, PCR amplification, sequencing

Full text

https://doi.org/10.17660/ActaHortic.2014.1046.84

Online Articles (95)

1. RECENT PROGRESS IN UNDERSTANDING THE GENETICS OF PEST AND DISEASE RESISTANCE IN GRAPEVINE

I.B. Dry

2. ADDITIONAL SOURCES OF REN1-LIKE POWDERY MILDEW RESISTANCE

S. Riaz | A. Tenscher | G.S. Dangl | M.A. Walker

3. NEW GENERATION OF RESISTANT TABLE GRAPE CULTIVARS

P. Kozma | S. Hoffmann | P. Cindric

4. INTRODUCTION OF APPLICATION OF CHINESE WILD GRAPES SPECIES

Yan Xu | Yuejin Wang

5. IDENTIFICATION OF AN R2R3 MYB TRANSCRIPTION FACTOR INVOLVED IN THE REGULATION OF THE STILBENE SYNTHASE PATHWAY IN GRAPEVINE

A. Vannozzi | P.K. Boss | A.R. Walker | M. Lucchin | I.B. Dry

6. BREEDING FOR DURABLE RESISTANCE TO DOWNY AND POWDERY MILDEW IN GRAPEVINE

7. SEQUENCING OF THE PHYLLOXERA RESISTANCE LOCUS RDV1 OF CULTIVAR ‘BÖRNER’

L. Hausmann | R. Eibach | E. Zyprian | R. Töpfer

8. DISSECTING THE GENETIC DETERMINANTS OF POWDERY MILDEW RESISTANCE IN GRAPE

M. Rex | L.J. Welter | R. Töpfer | E. Zyprian

9. DISSECTION OF DEFENSE PATHWAYS IN THE GRAPEVINE-POWDERY MILDEW INTERACTION BY EMPLOYING ARABIDOPSIS DEFENSE-RELATED MUTANTS

Wenping Qiu | W. Gassmann | Fei Gao | Kashmir Singh | Yiming Zhang

10. DEVELOPMENT OF MOLECULAR MARKERS FOR POWDERY MILDEW RESISTANCE IN GRAPEVINES

11. SOURCES OF PENETRATION AND PCD-MEDIATED RESISTANCE TO GRAPEVINE POWDERY MILDEW IN THE VITACEAE FAMILY

A. Feechan | S. Kabbara | I.B. Dry

12. REACTION OF GRAPE ROOTSTOCKS TO MELOIDOGYNE INCOGNITA AND M. JAVANICA

13. GLOBAL GENE RESPONSE TO VIRUS INFECTIONS IN GRAPEVINE

A. Vega | C. Medina | R. Gutiérrez | P. Arce-Johnson

14. THE INTERACTION OF ELSINOË AMPELINA WITH VITIS VINIFERA

15. BERRY CRACKING CAUSED BY POWDERY MILDEW (UNCINULA NECATOR) INFECTION TO ‘FUJIMINORI’ GRAPEVINES (VITIS SP.)

16. GRAY MOLD (BOTRYTIS CINEREA) INDUCED BERRY CRACKING IN ‘FUJIMINORI’ TABLE GRAPES (VITIS SP.)

Daeil Kim | Sung-Il Oh | In-Chang Son

17. OPTIMIZING THE BREEDING OF PIERCE’S DISEASE RESISTANT WINEGRAPES WITH MARKER-ASSISTED SELECTION

M.A. Walker | S. Riaz | A. Tenscher

18. ASSESSMENT OF THE BIOLOGICAL CHARACTERISTICS OF XYLELLA FASTIDIOSA IN XYLEM FLUID FROM A PIERCE’S DISEASE (PD) RESISTANT GRAPEVINE

Xiangyang Shi | H.C. Hoch | T.J. Burr

19. EXAMINATION OF MARKER-ASSISTED SELECTION FOR POWDERY AND DOWNY MILDEW RESISTANCE

20. SCREENING GRAPE HYBRID FAMILIES WITH MOLECULAR MARKERS LINKED TO RESISTANCE GENES

21. THE GENETIC MAPPING OF XIPHINEMA INDEX RESISTANCE DERIVED FROM VITIS ARIZONICA

S. Van Zyl | M.A. Vivier | S. Riaz | M.A. Walker

22. CLONING AND FUNCTIONAL CHARACTERISATION OF A PUTATIVE POWDERY MILDEW SUSCEPTIBILITY GENE IN GRAPEVINE

S.A. Salami | A. Ebadi | M.R. Naghavi | I.B. Dry

23. TOWARDS UNDERSTANDING THE MECHANISM OF HOST RESISTANCE TO DOWNY MILDEW DISEASE OF GRAPEVINE BY USING GENOME WIDE EXPRESSION PROFILING ANALYSIS

Jiao Wu | Yali Zhang | Jiang Lu

24. GENE SILENCING AS A STRATEGY TO INDUCE GRAPEVINE FANLEAF VIRUS (GFLV) RESISTANCE IN GRAPEVINE ROOTSTOCKS

25. PROGRESS IN GRAPEVINE BREEDING

R. Eibach | R. Töpfer

26. LOW-PRESSURE SELECTION FOR NEW GRAPE CROSSINGS (‘RIESLING ITALICO’ × ‘PINOT NOIR’; ‘RIESLING ITALICO’ × ‘CHARDONNAY’)

A. Vercesi | L. Bavaresco | M. Fregoni | M. Zamboni | M. Gatti

27. BRAZILIAN GRAPE BREEDING PROGRAM

U.A. Camargo | J.D.G. Maia | V. Quecini | P. Ritschel

28. TETRAPLOID TABLE GRAPE BREEDING IN JAPAN

N. Mitani | Y. Ban | A. Sato | A. Kono

29. DEVELOPMENT OF AUSTRALIAN ROOTSTOCKS WITH ROOT-KNOT NEMATODE RESISTANCE AND LOW POTASSIUM TRANSPORT

B.P. Smith | P.R. Clingeleffer | N.B. Morales | M.R. Thomas | R.R. Walker

30. INTRODUCTION, BREEDING AND PRODUCTION OF WINEGRAPES IN CHINA

Lijun Wang | Shaohua Li | Peige Fan

31. TABLE GRAPE BREEDING AT THE ARC INFRUITEC-NIETVOORBIJ, SOUTH AFRICA; ITS IMPACT ON THE SA INDUSTRY AND LATEST DEVELOPMENTS

32. GENERATION OF A NEW POLYPLOID GRAPE CULTIVAR BY USING HYBRID SEEDS INDUCED WITH COLCHICINE

Jun Chen | Xiaoping Tang | Xiaohe Ma | Qifeng Zhao | Zhigang Dong

33. EFFECTIVENESS OF CULTURE MEDIA ON THE SUCCESS OF EMBRYO RESCUE AMONG DIFFERENT CROSSES OF SEEDLESS GRAPES

Y. Hao | H. Wang | R. Yang | F.L. Wang | J. Lu

34. POLYPLOIDY INDUCTION OF MUTATION BY USING COLCHICINE ON TUBE SEEDLINGS OF VICTORIA GRAPE

Y.Y. Chang | X. Ji | J.L. Zhu | Y. Hao

35. ‘TANKEUMCHU’: A MID-RIPENING, BLACK-FRUITED TABLE GRAPE

36. GENETIC CONTROL OF PHYLLOTAXY PHASE SHIFT IN JUVENILE VINES IN A ROOTSTOCK HYBRID POPULATION

P. Cousins

37. DRYING RATE OF FRESH BERRIES FROM NATURAL DRY-ON-THE-VINE (DOV) GRAPE GERMPLASM

D.W. Ramming

38. QUALITY IMPROVEMENT IN ‘VIGNOLES’ THROUGH CLONAL SELECTION

P. Cousins | A. Garris

39. DEVELOPMENT OF TABLE AND RAISIN GRAPES WITH HIGH ANTHOCYANINS USING A LEAF DISK ASSAY

D.W. Ramming | P. Cousins

40. EVALUATION OF FOUR NEW ROOTSTOCK GENOTYPES OBTAINED BY BACK CROSS

P. Carnevali | L. Brancadoro | O. Failla

41. CHARACTERISTICS OF PROMISING MUSCADINE GRAPE (VITIS ROTUNDIFOLIA MICHX.) SELECTIONS FROM THE UNIVERSITY OF GEORGIA (USA) BREEDING PROGRAM

P.J. Conner

42. GRAPEVINE GENOME UPDATE AND BEYOND

A.-F. Adam-Blondon

43. TOWARD THE DECIPHERING OF CHROMOSOME STRUCTURE IN VITIS VINIFERA

44. COORDINATE INDUCTION OF ANTHOCYANIN BIOSYNTHETIC PATHWAY GENES BY VVMYBAS

P.R. Poudel | A. Azuma | S. Kobayashi | N. Goto-Yamamoto

45. METAGENOMIC DEEP-SEQUENCING: A PROMISING TOOL TO ELUCIDATE ETIOLOGY

46. IN SILICO SNP DETECTION FOR ANTHOCYANIN METABOLISM GENES IN VITIS

G. Dequigiovanni | P.S. Ritschel | J.D.G. Maia | V. Quecini

47. VITIS VINIFERA GENOME ANNOTATION IMPROVEMENT USING NEXT-GENERATION SEQUENCING TECHNOLOGIES AND NCBI PUBLIC DATA

48. ASSESSING THE GENETIC VARIABILITY OF GRAPE CLONES

49. PRELIMINARY OBSERVATIONS ON THE ROLE OF SIRTUIN GENES IN GRAPEVINE (VITIS VINIFERA L.) PHYSIOLOGY

50. CYCLOPHILIN: A DOWNY MILDEW RESISTANCE GENE CANDIDATE IN GRAPEVINE

51. CHARACTERIZATION OF A VITIS GAI PROMOTER IN ARABIDOPSIS

Yingzhen Yang | Gan-Yuan Zhong

52. DIGE SUBSTANTIALLY REDUCES PROTEIN SPOT VARIABILITY CAUSED BY 2D-PAGE AND INCREASES DETECTION OF DIFFERENTIALLY EXPRESSED PROTEINS

G.R. Cramer | L.G. Deluc | K. Spreeman | K. Schegg | A. Fennell

53. CLONING AND CHARACTERIZATION OF THE DAGGER NEMATODE RESISTANCE GENE XIR1

Chin-Feng Hwang | Kenong Xu | Rong Hu | S. Riaz | M.A. Walker

54. THE DEVELOPMENT OF TECHNIQUES AND MOLECULAR MARKERS FOR INTERSPECIFIC BREEDING OF GRAPE FOR FREEZING TOLERANCE

55. IDENTIFICATION OF ABA INDUCIBLE GENES FROM COLD-HARDY VITIS AMURENSIS RUPR. ‘ZUOSHAN-1’ BY SUPPRESSION SUBTRACTIVE HYBRIDIZATION

Yali Zhang | Jiao Wu | Huiqin Zhang | Jiang Lu

56. APPLICATIONS OF POLYPLOIDS IN MUSCADINE GRAPE (VITIS ROTUNDIFOLIA MICHX.) BREEDING

X. Xu | J. Lu | F. Bradley

57. IN VITRO SELECTION OF HYP TOLERANT CELL LINES FROM ‘CHARDONNAY’ EMBRYOGENIC SUSPENSION CULTURE

R. He | Y. Zhang | C. Wang | J. Wu | L. Zhu | M.A. Walker | X. Xu | J. Lu

58. PHENOTYPIC EVALUATION OF ‘THOMPSON SEEDLESS’ GRAPES TRANSFORMED WITH ATNHX1 GROWING IN HYDROPONICS AND POTTED SOILS

59. NEW INSIGHT INTO THE GENETICS OF COLOR IN GRAPE

60. DIFFERENTIAL EXPRESSION OF GENES IN BERRIES OF CV. ‘SANGIOVESE’ (VITIS VINIFERA L.) DURING RIPENING FOLLOWING CLUSTER THINNING AT VÉRAISON

61. CO-LOCALIZATION OF QTLS FOR SEEDLESSNESS AND DOWNY MILDEW RESISTANCE IN GRAPEVINE

62. GENETIC CHARACTERIZATION BASED ON THE BEST LINEAR UNBIASED PREDICTOR OF TRAITS RELATED TO CLUSTER ARCHITECTURE OF VITIS VINIFERA L.

63. POLYPHENOLIC POTENTIAL OF THE RARE CROATIAN CULTIVAR ‘DOBRICIC’ (VITIS VINIFERA L.)

I. Budic-Leto | G. Zdunic | I. Tomic-Potrebujes

64. MONOTERPENE LEVELS IN DIFFERENT GRAPEVINE (VITIS VINIFERA L.) CULTIVARS AND CLONES DURING FRUIT RIPENING

M. Nitsch | M. Hey | E.H. Rühl | O. Bitz

65. A MOLECULAR MARKER SYSTEM FOR IDENTIFICATION OF THE COLOUR-LOCUS IN DIFFERENT TISSUES OF GRAPEVINE (VITIS VINIFERA L.)

N. Ruh | E. Bleser | E. Rühl | O. Bitz

66. MARKER ASSISTED SELECTION FOR SEEDLESSNESS IN A MULTIRESISTANT TABLE GRAPE HYBRID FAMILY

67. DRAWING LINKS FROM TRANSCRIPTOME TO METABOLITES: THE EVOLUTION OF MUSCAT AROMA IN THE RIPENING BERRY

A. Dal Ri | L. Dalla Costa | V. Poletti | L. Martinelli | C. Moser

69. MORPHOLOGICAL CHARACTERISTICS OF CRACKING SUSCEPTIBLE KOREAN TABLE GRAPES, ‘HEUKGOOSUL’ AND ‘TAMNARA’

In-Chang Son | Sung-Il Oh | Daeil Kim

70. CHARACTERISTICS OF BERRY GROWTH IN CRACKING SUSCEPTIBLE TETRAPLOID GRAPEVINES

71. GENETIC ANALYSIS OF WINE GRAPE HIGH-QUALITY RIPENING IN THE ‘MONASTRELL’ × ‘SYRAH’ PROGENY

A. Bayo-Canha | J.I. Fernández-Fernández | A. Martínez Cutillas | L. Ruiz-García

72. THE AROMA-FORMING SUBSTANCES OF HYBRID SEEDLINGS OF GRAPE

S.V. Levchenko | V.A. Volynkin

73. ANTHOCYANIN PROFILING OF THE BERRY SKINS OF FIVE VITIS AMURENSIS GRAPES AND ONE RELATED HYBRID CULTIVAR

Fei He | Qiu-Hong Pan | Chang-Qing Duan | Jun Wang

74. CHANGES OF CONTENT AND ANTIOXIDANT ACTIVITY OF PHENOLIC COMPOUNDS DURING GIBBERELLIN-INDUCED DEVELOPMENT OF SEEDLESS MUSCAT GRAPEVINES

Shu-fen Tian

75. MARKER-ASSISTED BREEDING: IDENTIFICATION OF MONOTERPENSYNTHASES IN GRAPEVINE (VITIS VINIFERA) AND THEIR POTENTIAL AS MARKERS IN BREEDING

76. FUNCTIONAL CHARACTERIZATION OF TERPENE SYNTHASES OF ‘AROMATIC’ AND ‘NON-AROMATIC’ GRAPEVINE CULTIVARS

C. D'Onofrio | F. Matarese | G. Scalabrelli | P.K. Boss

77. GENEALOGY INVESTIGATION IN OVER 2,300 GRAPEVINE CULTIVARS (VITIS VINIFERA)

T. Lacombe | V. Laucou | M. Di Vecchi-Staraz | P. This | J.-M. Boursiquot

78. INTRAVARIETAL VARIABILITY OF ‘CRLJENAK KASTELANSKI’ AND ITS RELATIONSHIP WITH ‘ZINFANDEL’ AND ‘PRIMITIVO’ SELECTIONS

79. MOLECULAR SURVEY OF GEORGIAN TRADITIONAL GRAPEVINE GENETIC RESOURCES

80. CHARACTERIZATION OF GRAPE CULTIVARS THROUGH ESTP

E. Sawasaki | M.F. Moura | A.R. Verdi | C.L. Messias

81. PHENOTYPIC DIVERGENCE AMONG GRAPEVINE ACCESSIONS OF THE GERMPLASM COLLECTION AT IAC

82. BRAZILIAN GRAPE GERMPLASM BANK: PHENOLOGY AND INCIDENCE OF MAIN FUNGAL DISEASES

U.A. Camargo | J.D.G. Maia | C.A.E. Machado | P. Ritschel

83. GRAPEVINE VARIETY DETERMINATION FROM HERBARIUM AND ARCHEOLOGICAL SPECIMENS

N. Malenica | E. Maletic | S. Simon | I. Pejic

84. PLASTID DNA SEQUENCE DIVERSITY IN A WORLDWIDE SET OF GRAPEVINE CULTIVARS (VITIS VINIFERA L. SUBSP. VINIFERA)

85. ANALYSIS OF GRAPE ROOTSTOCKS BY MICROSATELLITE MARKERS

86. ANALYSIS OF PINOT CULTIVARS BY MICROSATELLITE MARKERS

G. Jahnke | J. Májer | P. Varga | B. Szőke

87. ITALIAN WILD GRAPEVINE: A STATE OF THE ART ON GERMPLASM AND CONSERVATION IN 2010; THE YEAR OF BIODIVERSITY

88. ‘RIBOLLA GIALLA’ FROM NORTH EASTERN ITALY, ‘REBULA’ FROM NORTHERN BALKANS AND ‘ROBOLA’ FROM IONIAN ISLANDS; DO THEY BELONG TO THE SAME POPULATION VARIETY OR ARE THEY GENETICALLY DIFFERENT?

89. PROTEOMIC ANALYSIS AMONG DIFFERENT AGLIANICO ECOTYPES

90. VITICULTURAL PERFORMANCES OF DIFFERENT ‘CABERNET SAUVIGNON’ CLONES

91. THE SOFTWARE FOR A ‘UNIVERSAL GRAPEVINE DATABASE’

C. D'Onofrio | G. Scalabrelli

92. MOLECULAR CHARACTERIZATION OF THE GRAPEVINE GERMPLASM COLLECTION HELD AT THE FONDAZIONE EDMUND MACH

93. ANALYSIS OF GENETIC STRUCTURE OF TWELVE SICILIAN GRAPEVINE CULTIVARS

94. AN AFLP-MARKER STUDY OF THE VITIS VINIFERA L. CULTIVAR ‘WHITE RIESLING’ COMPRISING 86 CLONES TO INVESTIGATE THE STABILITY OF CLONES

U.C.M. Anhalt | S. Crespo Martínez | E. Rühl | A. Forneck

95. SKIN PROTEOMIC COMPARISON AMONG FOUR GRAPE CULTIVARS WITH DIFFERENT ANTHOCYANIN CONTENTS