Articles

A STRAWBERRY EST DATABASE FOR EVALUATING FRUIT QUALITY TRAITS AND SELECTING IMPROVED GENOTYPES THROUGH CDNA MICROARRAYS

Article number
663_46
Pages
283 – 290
Language
English
Abstract
To assess strawberry (Fragaria x ananassa Duch.) fruit quality and correlate gene expression data with those from biochemical analyses, we analyzed 3161 expressed sequence tags (ESTs) amplified from a fruit cDNA library.
The 25 largest contigs related to plant genes with assigned functions comprised 499 ESTs (16% of the total), including genes not only associated with ripening (cell wall metabolism, sugar and acid synthesis, pigment formation, vitamin synthesis and allergenic properties), but also with plant-pathogen interactions, abiotic stresses and housekeeping functions.
Over 1800 representative ESTs were used to produce cDNA microarrays to carry out comparative profiling experiments with genotypes of different fruit quality.
Such microarray experiments have shown a number of genes whose differential expression correlated with differences among genotypes in important quality traits such as fruit firmness (cinnamoyl-CoA reductase, cinnamyl alcohol dehydrogenase, expansin, endo-beta-1,4-glucanase) and volatile compound composition (alcohol acyl transferase).

Publication
Authors
C. Rosati, F. Mourgues, F. Giorno, F. Carbone, M.A. Carboni, G. Perrotta
Keywords
DNA chips, functional genomics, gene expression, ripening
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