Home > IV International Symposium on Molecular Markers in Horticulture > Automating and documenting workflows for marker design from crop next-generation-sequencing data

Articles

Automating and documenting workflows for marker design from crop next-generation-sequencing data

Article number

1203_6

Pages

41 – 46

Language

English

Abstract

Publication

IV International Symposium on Molecular Markers in Horticulture

Authors

J. McCallum, M. Knäbel, E. Buck, H. Kong, T. Millar, B. Davis, S. Thomson, M. Pither‑Joyce, Z. Dwight, S. Baldwin

Keywords

genetic markers, genomics, programming

Full text

https://doi.org/10.17660/ActaHortic.2018.1203.6

Groups involved

Online Articles (25)

1. Challenge to genomic selection in strawberry at four breeding stations in Japan

2. Genotyping-by-sequencing for genomic selection of perennial ryegrass (Lolium perenne)

3. Resequencing of Cynara cardunculus L. genotypes and detection of chromosome-scale single nucleotide polymorphisms (SNPs)/indels

4. Genome-wide identification of single nucleotide polymorphisms (SNPs) and molecular characterization of Prunus rootstock germplasm using a genotyping-by-sequencing (GBS) approach

5. Fast construction of a reference genome: challenges and opportunities using ‘Royal Gala’ apple as a case study

6. Automating and documenting workflows for marker design from crop next-generation-sequencing data

7. A genome-wide survey of the microsatellite content of the eggplant genome and development of a web-based database

8. Marker-assisted introgression of black-rot resistance gene Xca1bc into cauliflower through interspecific hybridization

P. Kalia | B.B. Sharma | D. Singh

9. Progress in introgression of Papaya ringspot virus resistance from Vasconcellea pubescens to Carica papaya

C. Kanchana-udomkan | U. Nantawan | R. Drew | R. Ford

10. Tolerance to Pseudomonas syringae pv. actinidiae in a kiwifruit breeding parent is conferred by multiple loci

11. Marker-assisted pyramiding of quantitative trait loci controlling fruit quality traits in tomato

R. Calafiore | M.M. Rigano | A. Raiola | A. Aliberti | A. Barone

12. Region-wide association analysis and high-throughput resequencing strategies in peach to develop molecular markers for flat fruit marker-assisted selection

Y. Zhang | E. López-Girona | M.-J. Aranzana

13. Functional genomics- and bioinformatics-assisted gene marker development for economically important traits in cacao

E.A. Barlaan | E.K. Sales | A.C. Laurena

14. Marker development and applications in the University of Minnesota apple and grape breeding programs

S.L. Teh | M.D. Clark | J.J. Luby

15. A molecular dating service: finding the perfect match for every apple

T. Mair | I. Höller | W. Guerra | T. Letschka

16. Ploidy manipulation via cell engineering for citrus improvement facilitated by application of molecular markers

17. Diversity of plastids in citrus fruit

Yunliu Zeng | Yunjiang Cheng | Xiu-Xin Deng

18. Genetic analysis of the yellow skin trait in watermelon

19. Marker-assisted introgression of the Or gene for enhancing β-carotene content in Indian cauliflower

P. Kalia | P. Muthukumar | S. Soi

20. Identification of genes related to sugar content in Carica papaya L.: differential expression and candidate marker development

U. Nantawan | C. Kanchana-udomkan | R. Drew | R. Ford

21. Application of molecular markers at the Agricultural Research Council – Tropical and Subtropical Crops

22. A genetic diversity study of Persea

23. Genetic diversity investigation of the apple germplasm available at the Fondazione Edmund Mach

24. Breeding Genomics Laboratory: genotyping apples and grapevines for more sustainability and biodiversity

E. Zini | T. Letschka

25. Study of genetic variation and morphological traits in 25 melon cultivars by using molecular marker techniques

A. Tira-umphon | T. Tongdeenok | M. Ketudat-Cairns