Home > XII International Conference on Grapevine Breeding and Genetics > Genotyping-by-sequencing-derived single-nucleotide polymorphism catalog from a grapevine (Vitis vinifera L.) germplasm collection that includes the most representative Apulian autochthonous cultivars

Articles

Genotyping-by-sequencing-derived single-nucleotide polymorphism catalog from a grapevine (Vitis vinifera L.) germplasm collection that includes the most representative Apulian autochthonous cultivars

Article number

1248_10

Pages

69 – 76

Language

English

Abstract

Grapevine (Vitis vinifera L.) is one of the oldest cultivated plants, with wide genetic diversification and phenotypic plasticity that remains largely under-explored.
Since ancient times, Apulia has served as a central hub for commercial exchanges that have resulted in a rich heritage of grape genetic resources adapted to the pedoclimate conditions of the region.
Information on the genetic variation and knowledge of the structure of V. vinifera populations is essential to manage and preserve gene pools and to recover alleles left behind by selective breeding.
In this study, we applied the genotyping-by-sequencing (GBS) technique on a large grapevine collection including Apulian autochthonous cultivars and clones of some important local cultivars.
Work is in progress to generate a high-quality single-nucleotide polymorphism (SNP) dataset that will be used to assess genetic diversity, determine population structure and estimate intraclonal variability.
In addition, SNP markers will be combined with phenotypic data via genome-wide association studies in order to discover genetic loci associated with key agronomic traits.

Publication

XII International Conference on Grapevine Breeding and Genetics

Authors

M.M. Miazzi, N. D’Agostino, S. Gadaleta, V. Di Rienzo, V. Fanelli, W. Sabetta, C. Montemurro, F. Taranto

Keywords

grapevine, genotyping by sequencing, germplasm collection, single nucleotide polymorphisms

Full text

https://doi.org/10.17660/ActaHortic.2019.1248.10

Groups involved

Online Articles (82)

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8. Preservation via utilization: minor grape cultivars on-farm

9. Inventory and descriptions of wild grapevine (Vitis vinifera subsp. sylvestris) from Slovenia, Croatia and Bosnia and Herzegovina

10. Genotyping-by-sequencing-derived single-nucleotide polymorphism catalog from a grapevine (Vitis vinifera L.) germplasm collection that includes the most representative Apulian autochthonous cultivars

11. Genetic variability in grapevine clones of ‘Muscat of Alexandria’

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15. Postharvest evaluation of cold-hardy table-grape breeding lines

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19. Identification of downy mildew resistance genes Rpv10 and Rpv3 by DNA-marker analysis in a Russian grapevine germplasm collection

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20. Phylogeny of Vitis species based on a VvMybA1 marker analysis

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21. Phenology and thermal requirements of disease-resistant genotypes (PIWI) grown in the Goethe Grape Valley region of Brazil

22. Application and optimization of the CRISPR/Cas9 system in grape

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23. Exploring the use of transposon mobilization to produce a gene-tagged population for grapevine

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26. In-vitro embryo rescue in table-grape breeding for semiarid tropical regions of Brazil

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28. Generation of mildew-resistant grapevine clones via genome editing

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29. Control of the grapevine moth Lobesia botrana through genetic engineering manipulation of host-plant volatiles

30. INRA-ResDur: the French grapevine breeding programme for durable resistance to downy and powdery mildew

31. Integrating spatial variations in the vineyard to enhance quantitative trait locus (QTL) detection

32. Overview of genetic loci for traits in grapevine and their integration into the VIVC database

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33. Genome-wide association study of a diverse grapevine panel: example of berry weight

34. Annotation of whole-plastid genomes of wild grapes (Vitis vinifera subsp. sylvestris) from the south Caucasus, Europe and the Mediterranean Basin

I. Pipia | L. Roma | V. Tabidze

35. Unraveling the key molecular events of grape berry ripening

36. Singular effect of soil and climate on grapevine development and berry traits in two Italian cultivars, ‘Glera’ and ‘Corvina’

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37. Phenoliner: a multi-sensor field phenotyping platform

38. Phenotyping tools for genetic improvement of table grapes in Chile

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39. ‘BRS Vitória’: a new seedless table-grape cultivar for the São Francisco Valley, northeast Brazil

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41. Whole-genome sequencing and gene annotation of Georgian grape cultivars

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42. A few main parents contributed to the traditional grapevine cultivar assortment in north-western Italy, as revealed by microsatellites and single-nucleotide polymorphisms

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43. Extensive genotyping of a large collection of rootstocks, population structure analysis and core collection extrapolation for new breeding programs

44. Quantitative trait locus mapping of downy mildew and botrytis bunch rot resistance in a Vitis aestivalis-derived ‘Norton’-based population

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46. Genetic variation for grapevine reproductive development

47. Molecular analysis of bunch architecture in grapevine

E. Zyprian | R. Richter | S. Rossmann | K. Theres | R. Töpfer

48. Determination of genetic loci in the control network of grapevine flowering

A. Schwandner | I. Ochßner | L. Hausmann | R. Töpfer

49. Mapping the genetic architecture of grapevine bud growth-cycling quantitative traits

A. Fennell | D. Alahakoon | J. Luby | M. Clark

50. Characterization of the reproductive performance of a collection of grapevine cultivars

S. Ibáñez | J. Grimplet | E. Baroja | S. Hernaiz | J. Ibáñez

51. Transcriptomics analysis of ‘Cabernet Sauvignon’ berry skins from Reno and Bordeaux in the late stages of ripening

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52. Developing a model system to identify the main mechanisms involved in nitrogen growth responses of grafted grapevines

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53. Understanding scion-rootstock interactions at the graft interface of grapevine

54. Rootstocks for table grape ‘BRS Maria Bonita’ in the São Francisco Valley, northeast Brazil

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55. Rootstocks for table grape ‘BRS Clara’ in the São Francisco Valley, northeast Brazil

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56. Genetic dissection of grape berry ripening control: defining a role for NAC transcription factors

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57. Biochemical and transcriptomic analysis in berries of wild and cultivated grapevine (Vitis vinifera L.)

58. Genetic dissection of the natural dry-on-vine (NDOV) trait in grapevine

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60. Methyl jasmonate application to increase volatile compounds of Vitis labrusca L. grape berries cultivated under subtropical conditions

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61. Condensed tannins in the pericarp of diverse Vitis species

62. Investigating variability of the cultivar ‘Pinot blanc’ under different aspects

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66. Proteome analysis to identify anthocyanin transporters in grape cells

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68. Grapevine adaptation to abiotic stress: an overview

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70. Grapevine rootstocks differentially regulate root growth and architecture in response to nitrogen availability

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71. Physiological and biochemical responses to drought stress in some autochthonous grapevines of Turkey

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72. A perspective on breeding and implementing durable powdery mildew resistance

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73. Pyramidizing resistance genes in grape: a breeding program for the selection of elite cultivars

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74. Use of the NeoViGen96 chip to understand the defense status of cultivars and resistant genotypes of Vitis vinifera

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76. Subtilisin-like proteins and lipid signalling events: the missing links in grapevine resistance to Plasmopara viticola

77. Early detection of Plasmopara viticola-infected leaves through FT-ICR-MS metabolic profiling

78. The Rpv3-3 haplotype and stilbenoid induction mediate downy mildew resistance in a grapevine interspecific population

79. The molecular dialogue between grapevine inflorescence/berry and Botrytis cinerea during initial, quiescent and egression infection stages

80. Durable powdery mildew resistance in grapevines: myth or reality

S. Riaz | A. Tenscher | D. Pap | N. Romero | M.A. Walker

81. Contrasting susceptibilities to Flavescence dorée in Vitis vinifera cultivars and progenies suggest segregation of genetic traits involved in disease response

82. Evidence for sexual reproduction and fertile oospore production by Plasmopara viticola on the leaves of partially resistant grapevine cultivars

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