Articles

GENETIC DIVERSITY OF MUME, APRICOT AND JAPANESE PLUM CULTIVARS ASSESSED BY SSR MARKERS

Article number
814_107
Pages
629 – 634
Language
English
Abstract
The genetic diversity of, and relationships among, mume (Japanese apricot, Prunus mume Sieb. et Zucc.), apricot (Prunus armeniaca L.), and Japanese plum (Prunus salicina Lindl.) were assessed by SSR markers.
A total of 67 germplasms were used in this study, including 26 mume, 19 apricot, and 22 Japanese plum varieties.
Fifty-eight SSR markers developed from peach and apricot were tested for transferability in mume, apricot, and Japanese plum.
Out of the 58 SSR markers tested, 39, 40, and 39 SSRs could produce amplified fragments in mume, apricot, and Japanese plum respectively.
Twelve SSR markers were chosen for further evaluation due to discrete amplification for all species and germplasms.
All varieties, except for two sets of original and bud sport cultivars, were differentiated together by using 12 SSR loci.
A total of 84 alleles were observed in mume for 12 SSR loci, and their values of observed heterozygosity (HO) and expected heterozygosity (HE) ranged from 0.19 to 0.92 (mean value of 0.59) and 0.18 to 0.92 (mean value of 0.62) respectively.
Ninety-seven and 73 alleles were found for apricot and Japanese plum respectively.
The values of HO and HE were 0.72 and 0.67 for Japanese plum.
A phenogram for 67 mume, apricot, and Japanese plum varieties was constructed by the UPGMA method based on genetic similarity.
The obtained phenogram revealed that the 67 tested varieties were clustered into three major groups, corresponding to three species, i.e., mume, apricot, and Japanese plum.
Two subgroups were found in the mume group, which would correspond to the hybrids between mume and apricot, and the wild mume originated in Taiwan.
This information will be useful for estimation of genetic backgrounds, DNA fingerprinting, and breeding programs in mume, apricot, and Japanese plum.

Publication
Authors
K. Hayashi, K. Shimazu, H. Yaegaki, M. Yamaguchi, C. Nishitani, T. Yamamoto
Keywords
Prunus mume, Prunus armeniaca, Prunus salicina, simple sequence repeat
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