Home > XVI International Symposium on Apricot Breeding and Culture > Optimization of an algorithm for creating an apricot DNA fingerprint library

Articles

Optimization of an algorithm for creating an apricot DNA fingerprint library

Article number

1214_31

Pages

181 – 188

Language

English

Abstract

To develop a DNA fingerprint library for distinguishing apricot cultivars, an algorithm was proposed to get the minimum combination of DNA fingerprinting, and the validity of the algorithm was verified using real datasets of simple sequence repeats (SSR) and amplified fragment length polymorphisms (AFLP). The results obtained by the algorithm proved to be accurate and reliable.
Compared with manual analysis, computer analysis can complete the whole process in a few seconds.
Apricot cultivars (130) could be distinguished by at least four pairs of SSR primers, while only one pair of AFLP primers can distinguish 150 apricot cultivars.
AFLP was more suitable for cultivar identification than SSR. Parameters such as percentage of distinguishing cultivars by primers (S_score) and frequency of a primer in primer combinations (F_q) can be used to further analyze the biological significance of the primers.

Publication

XVI International Symposium on Apricot Breeding and Culture

Authors

F.C. Jiang, Y.Z. Wang, J.H. Zhang, H.Y. Sun, L. Yang

Keywords

algorithm, cultivar identification, DNA fingerprinting, computer

Full text

https://doi.org/10.17660/ActaHortic.2018.1214.31

Groups involved

Online Articles (50)

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M. Mészáros | B. Krška | E. Costes

2. Fluorescence microscopy as a tool for determining self-incompatibility in apricot cultivars

D. Milatović | D. Nikolić | A. Radović | B. Krška

3. Chilling and heat requirements for flowering in apricot cultivars

M. Ruml | D. Milatović | D. Đurović | G. Zec | M. Jokić | M. Radović

4. Plum and apricot industry: present status and future perspectives in Sichuan, China

J. Liu

5. Effects of cross-pollination, self-pollination, and natural pollination on golden apricot (Prunus armeniaca) fertilization and embryogenesis

S.J. Qin | G.C. Liu | H. Li | W.J. Zhou | D.G. Lyu

6. Preliminary study on the low self-fertility rate of ‘Kuijin’ apricots

X.P. Han | J.Z. Wang | X.M. Xue | P.X. Nie | R. Chen | C.M. Gao

7. The ILLIAD project: sustainable, local or localized, innovative food chains – application to apricot production

S. Bureau | B. Gouble | J.M. Audergon | S. Costa | S. Tozanli

8. Introduction of apricot to Moscow and surrounding regions: results of 32 years of work

L.A. Kramarenko

9. Mechanical harvest: a realistic challenge for the processed apricot market?

B. Gouble | P. Reling | C.M.G.C. Renard | J.M. Broquaire | C. Chamet | J.M. Audergon

10. Effect of cross-fertilizer pollination on fruit yield and fruit quality of Prunus armeniaca ‘Küzlük Ürük’

S.R. Zhao | K. Liao | X.Q. An | J. Liu | M.X. Da | R.Q. Du | S.K. Zhang

11. Determination of Sphaerolecanium prunastri Fonscolombe, 1834 (Hemiptera: Coccidae), and its parasitoids and predators in apricot areas of Malatya province, Turkey

T. Yiğit | H. Tunaz

12. Preliminary results on the behaviour of two micropropagated and grafted apricot cultivars

C. Xiloyannis | A.C. Tuzio | B. Dichio | M. Evangelos | K. Zuccherelli | G. Zuccherelli

13. Integrated life-cycle assessment in sustainable and conventional apricot orchards in southern Italy

E. Lardo | G. Montanaro | B. Dichio | C. Xiloyannis

14. Propagation of some apricot clonal rootstocks and their influence on growth of nursery trees

A.I. Yordanov | S.G. Tabakov | P.V. Kaymakanov

15. The PERPHECLIM ACCAF Project – perennial fruit crops and forest phenology evolution facing climatic changes

I. Garcia de Cortazar-Atauri | J.M. Audergon | P. Bertuzzi | C. Anger | M. Bonhomme | I. Chuine | H. Davi | S. Delzon | E. Duchene | J.M. Legave | H. Raynal | C. Pichot | C. Van Leeuween

16. Reproductive biology of Armenian apricot cultivars

A.A. Nebish | G.S. Santrosyan | R.M. Aroutiounian

17. Protected cultivation of apricot in Liaoning province, China

N. Liu

18. Development status and trend of apricot cultivation in Liaoyang, China

X.F. Xu | X.M. Han | H.Z. Han | L. Li | T.H. Wu

19. A prototype of a stationary DA device to group apricot fruits in classes of homogeneous ripening

G. Costa | G. Fiori | L. Rocchi | S. Vidoni | N. Berthod | S. Besse | S. Knieling | J. Rossier

20. Fruit quality and volatile compounds of ‘Jinhong’ plums harvested at different times

G.P. Wang | J.Z. Wang | X.M. Xue

21. Analysis of aromatic constituents of apricot ‘Jinkaite’ at different developmental stages

X.M. Xue | A.N. Zhang | X.P. Han | J.Z. Wang

22. A new technology for apricot frost disaster prevention

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23. Water adhered on the fruit surface during maturation period is the main cause of apricot cracking

G.X. Ding | B.M. Wang | B.C. Fu | G.Y. Cang | X.Y. Niu | P.F. Wen

24. Infrared spectroscopy as a rapid tool to assess apricot fruit quality: comparison of two strategies for a model establishment

S. Bureau | C.M.G.C. Renard | Z. Fakhfackh | J.M. Audergon

25. Storage of apricot ‘Hacıhaliloglu’ under modified atmosphere and cold storage conditions

B. Öztürk | Y. Sarıtepe | K. Öztürk | M. Didin | R. Konak

26. Influence of fruit maturity, 1-methylcyclopropene (1‑MCP) treatment and storage temperature on ethylene production and firmness of ‘Goldrich’ and ‘Orangered’ apricots

D. Christen | S. Gabioud Rebeaud | P.-Y. Cotter | F. Gasser

27. Fruit ripening evolution in diverse commercial apricots by conventional and non-destructive methods: preliminary results

A. Ciacciulli | D. Bassi | L. Castellari | S. Foschi

28. ‘Ruža’, a new apricot cultivar from Serbia

D. Milatović | M.F. Akšić | G. Zec | D. Đurović

29. Two specific apricot cultivars in Sichuan Province

J. Li

30. ‘Meixiang’, a new apricot cultivar

Y.L. Chen | Y.B. Feng | L.H. Xia

31. Optimization of an algorithm for creating an apricot DNA fingerprint library

F.C. Jiang | Y.Z. Wang | J.H. Zhang | H.Y. Sun | L. Yang

32. Three superior apricot lines from Liaoning Institute of Pomology, China

M. Xu | W.S. Liu | N. Liu | Q.P. Zhang | S. Liu | Y.P. Zhang

33. Clonal rootstock selection suitable for apricot cultivars ‘Hacıhaliloglu’ and ‘Kabaası’

A. Erdoğan | T. Yiğit | S. Şahin | K.U. Yılmaz | M.N. Demirtaş | H.Ş. Öylek | S. Ercişli

34. Breeding of a fine apricot cultivar, ‘Xiajin’, for protected cultivation

Q.Y. Zhai | Z.H. Liu

35. Genetic structure of a worldwide germplasm collection of Prunus armeniaca L.

H. Bourguiba | A. Lasnier | B. Krška | T. Zhebentyaeva | A. Remay | C. D¿Onofrio | C.A. Ledbetter | H. Iketani | D. Christen | W. Liu | G. Roch | J.M. Audergon

36. Selections issued from CEP Innovation, Centrex and INRA: the apricot breeding program in France

G. Fremondiere | A. Blanc | F. Gilles | G. Clauzel | J.M. Broquaire | G. Roch | B. Gouble | S. Bureau | C. Pitiot | J.M. Audergon

37. An overview of apricot breeding in China

H.Y. Sun | J.H. Zhang | L. Yang | F.C. Jiang | Y.Z. Wang

38. New apricot selections from the CEBAS-CSIC breeding program (Murcia, Spain) that broaden fruit ripening time

D. Ruiz | A. Molina | M.D. Nortes | A. Molina | E. Ortega | P. Martínez-Gómez | F. Dicenta | M. Rubio | J. Egea

39. Allelic variations of endopolygalacturonase genes associated with fruit softening in apricot (Prunus armeniaca)

X. Wei | Q.P. Zhang | W.S. Liu | N. Liu | Y.P. Zhang | M. Xu | X.X. Ma | S. Liu | Y.J. Zhang

40. Phenotypic, molecular and phytohormonal evidence of Plum pox virus silencing in susceptible apricot genotypes

M. Rubio | A. Albacete | F. Dicenta | P. Martínez-Gómez

41. Multi-resistance of apricot cultivars to the most important diseases in Spain

M. Rubio | D. Ruiz | P. Martínez-Gómez | J. Egea | F. Dicenta

42. Influence of apricot genotypes and their volatile profiles on their attractiveness to the European stone fruit yellows vector Cacopsylla pruni

Z.N. Andrianjaka-Camps | A. Retailleau | D. Christen

43. Influence of the distribution and infection rates of psyllids on the vectoring ability of European stone fruit yellows in Switzerland

Z.N. Andrianjaka-Camps | S. Schaerer | S. Kuske | M. Bünter | N. Sauvion | D. Christen

44. Evaluation of entomopathogenic fungi and nematodes against Capnodis tenebrionis L. (Coleoptera: Buprestidae) larvae in apricot orchards

T. Yiğit | M.K. Er | S. Hazır | S. Özcan | T. Çevik | H.Ş. Öylek

45. Analysis of the morphological diversity of Daxigou wild apricot floral organs in Huocheng, Xinjiang, China

Q. Cao | K. Liao | J. Liu | X.F. Yang | H.Z. Si | M.M. Liu | X.X. Liao

46. Establishment of a core collection of cultivated apricot based on phenotypic characters in Xinjiang

J. Liu | K. Liao | Q. Cao | Q. Sun | H. Liu | Y. Jia

47. Linkage disequilibrium in North China and Xingjiang apricot cultivars (Prunus armeniaca L.)

S. Liu | Q.P. Zhang | D.C. Liu | N. Liu | A.M. Zhang | W.S. Liu

48. Genetic diversity and subgroups of apricot (Prunus armeniaca L.) from North China using a model-based method with simple sequence repeats

S. Liu | D.C. Liu | Q.P. Zhang | N. Liu | A.M. Zhang | W.S. Liu

49. Diversity in fruit traits among different apricot (Prunus armeniaca) populations from different regions

X.X. Ma | W.S. Liu | Q.P. Zhang | N. Liu | Y.P. Zhang | M. Xu | Y.J. Zhang

50. Fruit-setting rates in apricot accessions from different cultivation regions of China

Y.P. Zhang | X.X. Ma | N. Liu | W.S. Liu | M. Xu | Q.P. Zhang | S. Liu | T.X. Zhang