Articles

MICROARRAY AND REAL TIME PCR ANALYSIS OF FRUIT TRANSCRIPTOME IN STRAWBERRY ELITE GENOTYPES AND CORRELATION WITH PTR-MS SPECTRA OF VOLATILE COMPOUNDS

Article number
682_29
Pages
269 – 276
Language
English
Abstract
We have studied gene expression in ripe strawberry (Fragaria x ananassa) fruits in several Italian Elite varieties, to assess fruit quality and correlate gene expression data with those from biochemical analyses.
More than 3000 expressed sequence tags (ESTs) obtained from a fruit cDNA library of cultivar ‘Queen Elisa’ were analyzed.
Over 1800 selected ESTs were used to produce a cDNA microarray.
Comparative profiling experiments revealed a limited number of differentially expressed genes, related to important quality and post-harvest traits as fruit firmness and aroma profile.
Data of microarray experiments were confirmed by Real Time PCR analyses.
Four major genes (cinnamoyl-CoA reductase, cinnamyl alcohol dehydrogenase, Expansin 4 and endo β-1,4 glucanase) were differentially expressed in soft and firm fruits.
An ascorbate peroxidase gene was related to differences in vitamin C levels.
Proton transfer reaction mass spectrometry (PTR-MS) analyses of volatile compounds of fruit head space showed a direct correlation between the emission of esters and differential expression of the alcohol acyl transferase gene involved in their synthesis.

Publication
Authors
F. Carbone, F. Mourgues, C. Rosati, G. Perrotta, F. Biasioli, F. Gasperi, T.D. Märk
Keywords
cDNA microarrays, fruit quality, gene expression analyses, Proton Transfer Reaction Mass Spectrometry, ripening
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