Home > IV Asian Horticultural Congress – AHC2023 > Genomic analysis of the region including transcription factor PavMYB10.1 and development of DNA markers for yellow pericarp of sweet cherry

Articles

Genomic analysis of the region including transcription factor PavMYB10.1 and development of DNA markers for yellow pericarp of sweet cherry

Article number

1404_126

Pages

923 – 930

Language

English

Abstract

Most of the sweet cherries, such as Japan’s main cultivar ‘Satonishiki’, have bright red pericarps.
However, some other cultivars with yellow pericarps also exist, such as ‘Gassan Nishiki’. These pericarp colors are important traits that determine fruit value.
Therefore, it is necessary to accumulate breeding information on these traits.
The red coloration of the pericarp of sweet cherries is due to anthocyanin accumulation, and numerous genes are involved in its biosynthesis.
The transcription factor PavMYB10.1 plays an important role in the coloration of sweet cherries.
Here, whole-genome sequencing of yellow-skinned cultivars was performed to clarify the structure of both ends of the deleted region by analyzing the PavMYB10.1 peripheral region.
Genome sequencing revealed that an approximately 90-kb region, including PavMYB10.1, was deleted in the yellow-skinned cultivars, which contains approximately 500-bp insertion sequence.
Additionally, we attempted to develop a primer set to discriminate between the PavMYB10.1-deficient genotypes.
For the 102 cultivars, multiplex PCR was performed using the normal amplification primer set PavPAL1-1 and the primer set Pav_Ym_L. In addition, a 701-bp amplification was confirmed in all yellow-skinned cultivars and 5 out of 99 red-skinned cultivars.
Multiplex PCR using the Myb and Pav_Ym_L primer sets in the two reciprocal cross-seedlings was used to determine genotypes containing PavMYB10.1c and functional PavMYB10.1. We hypothesized that the progeny with one fragment would be yellow-skinned, whereas progeny with two fragments would be red-skinned.
The results indicated that the Pav_Ym_L primer set developed in this study can positively detect the presence of PavMYB10.1c, making it possible to discriminate heterozygotes.
Furthermore, by combining the primer set Pav_Ym_L with other DNA markers developed in previous studies, all PavMYB10.1 genotypes can be identified.
Collectively, these results contribute to the efficiency improvement of marker-based selection breeding for the pericarp color of sweet cherries in Japan, especially in Yamagata Prefecture.

Publication

IV Asian Horticultural Congress – AHC2023

Authors

M. Sato, F. Tada, K. Ikeda

Keywords

yellow peel, skin color, PavMYB10.1, cherry cultivars

Full text

https://doi.org/10.17660/ActaHortic.2024.1404.126

Groups involved

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P.A. Casquero | A. Porteous | C. Domínguez | A. Rodríguez-González | S. Mayo-Prieto

181. Effects of rain-protected culture in a plastic greenhouse using the whole harvest cultivation method for one-year-old asparagus plants

S. Yamashita | K. Seimiya | K. Yamafuji | T. Taguchi | S. Motoki

182. Estimation of the light extinction coefficients of lateral asparagus ferns using a numerical method

T. Kuroyanagi | H. Yoshikoshi | M. Hikawa-Endo

183. Glycine betaine material affects the growth and yield of asparagus in the long-term harvest production system in a semi-forcing culture

F. Satake | K. Okada | Y. Yoshida | W. Sakata | S. Motoki

184. Mounding increases the rate of thick spears of asparagus

K. Suzuki | Y. Ayabe | A. Kato | S. Motoki

185. Investigation of nutrient solution management in hydroponics using organic fertilizer

T. Endoh | M. Takagaki | P. Suwitchyanon | C. Chaturong

186. Effect of different cultivation methods and environments on the growth and yield of Shimonita-Negi

M. Okabe | K. Obokata | T. Hirose | Y. Hashida

187. Predicting corn salad (Valerianella spp.) weight in a plant factory with artificial lighting (PFAL) using K-Nearest Neighbors algorithm (KNN)

S. Dhammayorddee | C. Chanseetis | A. Kato | M. Takagaki | N. Lookin

188. The effect of water and fertilizer types on growth and yield of supan-supan (Neptunia oleracea) cultivated on flooded Ultisol media

H. Susanti | J. Purnomo | O.A. Kumadawara

189. Effect of low sunlight and high temperature during flower bud differentiation on the cut flower quality of carnation ‘Cherry Tessino’

S. Kamachi | R. Sakai | S. Nagashima | S. Mori

190. Deficit irrigation and fertilizer rates affecting growth, flower quality and physiological changes in tuberous begonia grown in plant factory

C. Inkham | K. Panjama | S. Ruamrungsri

191. Growth and flowering characteristics of Calendula under different light spectra in a controlled environment

M. Munyanont | N. Lu | T. Joilek | D.F. Rachma | M. Takagaki

192. Selection of optimal marigold (Tagetes patula) cultivar as an edible flower in a plant factory

N.Y. Kwak | B.H. Sung | K.P.S. Kumaratenna | Y.Y. Cho

193. Promoting flower yields, photosynthetic pigments and some secondary metabolite in Marguerite daisy (Chrysanthemum frutescens L.) cut flower under the smart farming system by pinching technique

Y. Luekhampa | C. Seelatlao | W. Chareontham | J. Sanitchon | P. Hongpakdee

194. Nutrient deficiencies affect growth and development of vinca

S. Ruamrungsri | C. Inkham | K. Panjama

195. Relationship between Asian ginseng decline and soil chemical property

Md.A.A. Mahmud | Y. Matsubara | T. Ikezawa

196. Influence of different flower vases on the impression of cut flowers

Y. Mitarai

197. Effects of different LED light spectrum on growth and cannabinoid contents of Cannabis sativa L. hybrid ‘KKU’ cultivars under an indoor pot cultivation

P. Nounbunma | P. Hongpakdee | J. Paluka | C. Lapjit

198. Effects of cultivation environmental factors on the growth of the edible cactus (Nopalea cochenillifera) grown under hydroponic conditions

S. Tsuchimoto | K. Okada | K. Kondo | T. Horibe

199. Calcium and magnesium biofortification of the edible cactus Nopalea cochenillifera grown under hydroponic conditions

E. Nishimura | K. Hayashi | T. Horibe

200. Effect of selling area, period, and type on the price of okra (Abelmoschus esculentus L.) in Japan

L. Sato | N. Miyamoto | S. Motoki

201. Comparative analysis of asparagus marketing practices in Europe, North America, and Asia during summer and autumn

S. Yamashita | S. Motoki

202. Edible alleys in the discourse of urban horticulture: a case study on densely built urban renewal districts in Chiayi, Taiwan

T.I. Lee

203. Application of calcium chloride on yield and quality of Capsicum annuum L.

N. Montri | S. Sengseng | R. Deewatthanawong | K. Bunya-atichart

204. Development of a growth state estimation system using a moving camera in strawberry cultivation

S. Matsuo | H. Umeda

205. The impact of adding nanoparticles to the media to speed up the in vitro multiplication stage of banana explants

P. Nugrahani | I.R. Moeljani