Home > IV Asian Horticultural Congress – AHC2023 > Development of a database program for managing genotype information and simulating segregation patterns of horticulturally important genes in apple

Articles

Development of a database program for managing genotype information and simulating segregation patterns of horticulturally important genes in apple

Article number

1404_85

Pages

625 – 630

Language

English

Abstract

Over the last two decades, numerous DNA markers useful in breeding programs in domesticated apple (Malus × domestica Borkh), have been developed through genomic research.
Marker-assisted breeding (MAB) or genomics-assisted breeding (GAB) has been employed in breeding programs on the ground.
They involve screening of the available genotypes for specific DNA markers, which can then be applied for the selection of parents while making crosses.
However, this selection is often managed by breeders on spreadsheets, as there is no small-scale program available for storing that information with a user-friendly interface.
Moreover, for efficient use of farm resources, it is important to estimate the exact number of seedlings to be raised.
To address these issues, we developed a database program named Electric Record Assistant for Breeding-Genotype (ERAB-Genotype). The database can store genotypic information for gene/DNA markers often used in scion apple breeding, such as disease resistance, fruit quality, cross compatibility, and recessive lethality.
The simulation function of the program generates probable segregation patterns of each gene/trait and estimates the proportion of individuals that can fulfill the selection criteria.
Inbreeding coefficient values of available cultivars and possible cross combinations are also displayed.
ERAB-Genotype helps breeders in designing cross combinations for an efficient marker-assisted selection strategy and avoidance of inbreeding depression.

Publication

IV Asian Horticultural Congress – AHC2023

Authors

S. Moriya, T. Shimizu, A. Hori, Y. Sawamura

Keywords

apple, cross combination, inbreeding coefficient, marker-assisted selection, simulation

Full text

https://doi.org/10.17660/ActaHortic.2024.1404.85

Groups involved

Online Articles (205)

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F. Satake | K. Okada | Y. Yoshida | W. Sakata | S. Motoki

184. Mounding increases the rate of thick spears of asparagus

K. Suzuki | Y. Ayabe | A. Kato | S. Motoki

185. Investigation of nutrient solution management in hydroponics using organic fertilizer

T. Endoh | M. Takagaki | P. Suwitchyanon | C. Chaturong

186. Effect of different cultivation methods and environments on the growth and yield of Shimonita-Negi

M. Okabe | K. Obokata | T. Hirose | Y. Hashida

187. Predicting corn salad (Valerianella spp.) weight in a plant factory with artificial lighting (PFAL) using K-Nearest Neighbors algorithm (KNN)

S. Dhammayorddee | C. Chanseetis | A. Kato | M. Takagaki | N. Lookin

188. The effect of water and fertilizer types on growth and yield of supan-supan (Neptunia oleracea) cultivated on flooded Ultisol media

H. Susanti | J. Purnomo | O.A. Kumadawara

189. Effect of low sunlight and high temperature during flower bud differentiation on the cut flower quality of carnation ‘Cherry Tessino’

S. Kamachi | R. Sakai | S. Nagashima | S. Mori

190. Deficit irrigation and fertilizer rates affecting growth, flower quality and physiological changes in tuberous begonia grown in plant factory

C. Inkham | K. Panjama | S. Ruamrungsri

191. Growth and flowering characteristics of Calendula under different light spectra in a controlled environment

M. Munyanont | N. Lu | T. Joilek | D.F. Rachma | M. Takagaki

192. Selection of optimal marigold (Tagetes patula) cultivar as an edible flower in a plant factory

N.Y. Kwak | B.H. Sung | K.P.S. Kumaratenna | Y.Y. Cho

193. Promoting flower yields, photosynthetic pigments and some secondary metabolite in Marguerite daisy (Chrysanthemum frutescens L.) cut flower under the smart farming system by pinching technique

Y. Luekhampa | C. Seelatlao | W. Chareontham | J. Sanitchon | P. Hongpakdee

194. Nutrient deficiencies affect growth and development of vinca

S. Ruamrungsri | C. Inkham | K. Panjama

195. Relationship between Asian ginseng decline and soil chemical property

Md.A.A. Mahmud | Y. Matsubara | T. Ikezawa

196. Influence of different flower vases on the impression of cut flowers

Y. Mitarai

197. Effects of different LED light spectrum on growth and cannabinoid contents of Cannabis sativa L. hybrid ‘KKU’ cultivars under an indoor pot cultivation

P. Nounbunma | P. Hongpakdee | J. Paluka | C. Lapjit

198. Effects of cultivation environmental factors on the growth of the edible cactus (Nopalea cochenillifera) grown under hydroponic conditions

S. Tsuchimoto | K. Okada | K. Kondo | T. Horibe

199. Calcium and magnesium biofortification of the edible cactus Nopalea cochenillifera grown under hydroponic conditions

E. Nishimura | K. Hayashi | T. Horibe

200. Effect of selling area, period, and type on the price of okra (Abelmoschus esculentus L.) in Japan

L. Sato | N. Miyamoto | S. Motoki

201. Comparative analysis of asparagus marketing practices in Europe, North America, and Asia during summer and autumn

S. Yamashita | S. Motoki

202. Edible alleys in the discourse of urban horticulture: a case study on densely built urban renewal districts in Chiayi, Taiwan

T.I. Lee

203. Application of calcium chloride on yield and quality of Capsicum annuum L.

N. Montri | S. Sengseng | R. Deewatthanawong | K. Bunya-atichart

204. Development of a growth state estimation system using a moving camera in strawberry cultivation

S. Matsuo | H. Umeda

205. The impact of adding nanoparticles to the media to speed up the in vitro multiplication stage of banana explants

P. Nugrahani | I.R. Moeljani